artadia

geek and genetics stuff

Friday, December 12, 2025

two simple python programs

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 This program codes numerically unknown parent groups from a pedigree file where missing parents have codes "GR", and there is dat...
Friday, September 5, 2025

How to find out Intel MKL version

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 First, find out your installation: $ echo $MKLROOT /opt/intel/oneapi/mkl/2023.0.0 Go there and find the file mkl_version.h : $ find ./ -nam...
Tuesday, July 29, 2025

line end Windows versus others

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 Windows users that introduce their files in Unix (Linux, Mac) systems sometimes have lots of unexpected problems due to end of line codings...
Tuesday, March 25, 2025

handling python files in parallel

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ar=[str(x) for x in range(0,5)] print(*ar) handles = [open('file'+x, 'w') for x in ar] # not using generator #https://stacko...
Wednesday, November 27, 2024

quick filter in awk

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 make a list of animals in col2 of 1st file, then print 2nd file if animals ar NOT in the list awk 'FNR==NR{inn[$2]; next}   !($2 in inn...
Friday, October 18, 2024

python like awk

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 so I want to put Python in a pipe where it reads from std in , does something, writes to std out: $ cat test.py #!/usr/bin/env python3 impo...
Friday, March 1, 2024

extract UPG allocation from renumf90 log

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 so you want to know from the output of renumf90 (say  ren.log)  how many animals were allocated to each UPG? The output looks like this:   ...
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